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martini: an R package for genome-wide association studies using SNP networks

Chloé-Agathe Azencott , Héctor Climente-González
Preprints, Working Papers, ... hal-03122108v1
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A review of the use of time‐varying covariates in the Fine‐Gray subdistribution hazard competing risk regression model

Peter Austin , Aurélien Latouche , Jason Fine
Statistics in Medicine, 2019, ⟨10.1002/sim.8399⟩
Journal articles hal-02349043v1

Origin, Analytical Characterization, and Use of Human Odor in Forensics

Vincent Cuzuel , Guillaume Cognon , Isabelle Rivals , Charles Sauleau , François Heulard , et al.
Journal of Forensic Sciences, 2017, Vol. 62 (n° 2), pp.330-350. ⟨10.1111/1556-4029.13394⟩
Journal articles halshs-02524960v1
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The French Early Breast Cancer Cohort (FRESH): A Resource for Breast Cancer Research and Evaluations of Oncology Practices Based on the French National Healthcare System Database (SNDS)

Elise Dumas , Lucie Laot , Florence Coussy , Beatriz Grandal Rejo , Eric Daoud , et al.
Cancers, 2022, 14 (11), pp.2671. ⟨10.3390/cancers14112671⟩
Journal articles hal-03901737v1
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Supervised Quantile Normalisation

Marine Le Morvan , Jean-Philippe Vert
Preprints, Working Papers, ... hal-01525306v1

EDEN : An Event DEtection Network for the annotation of Breast Cancer recurrences in administrative claims data

Elise Dumas , Anne-Sophie Hamy , Sophie Houzard , Eva Hernandez , Aullène Toussaint , et al.
Preprints, Working Papers, ... hal-03903457v1
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A new protein binding pocket similarity measure based on comparison of 3D atom clouds: application to ligand prediction

Brice Hoffmann , Mikhail Zaslavskiy , Jean-Philippe Vert , Véronique Stoven
Preprints, Working Papers, ... hal-00402627v2
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Clusterpath An Algorithm for Clustering using Convex Fusion Penalties

Toby Dylan Hocking , Armand Joulin , Francis Bach , Jean-Philippe Vert
28th international conference on machine learning, Jun 2011, United States. pp.1
Conference papers hal-00591630v1
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Novel Methods for Epistasis Detection in Genome-Wide Association Studies

Lotfi Slim , Clement Chatelain , Jean-Philippe Vert , Chloé-Agathe Azencott
PLoS ONE, 2020, 15 (11), pp.e0242927. ⟨10.1371/journal.pone.0242927⟩
Journal articles hal-01984919v2

pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods

Abdelkader Behdenna , Julien Haziza , Chloé-Agathe Azencott , Akpéli Nordor
Preprints, Working Papers, ... hal-03114226v1
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Biological networks and GWAS: comparing and combining network methods to understand the genetics of familial breast cancer susceptibility in the GENESIS study

Héctor Climente-González , Christine Lonjou , Fabienne Lesueur , Dominique Stoppa-Lyonnet , Nadine Andrieu , et al.
PLoS Computational Biology, 2021, ⟨10.1101/2020.05.04.076661⟩
Journal articles hal-03114234v1
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Group Lasso with Overlaps: the Latent Group Lasso approach

Guillaume Obozinski , Laurent Jacob , Jean-Philippe Vert
[Research Report] 2011, pp.60
Reports inria-00628498v1

Insights for Quantifying the Long-Term Benefit of Immunotherapy Using Quantile Regression

Bassirou Mboup , Christophe Le Tourneau , Aurélien Latouche
JCO precision oncology, 2021, 5, pp.173-176. ⟨10.1200/PO.20.00164⟩
Journal articles hal-03822479v1

Block HSIC Lasso: model-free biomarker detection for ultra-high dimensional data

Héctor Climente-González , Chloé-Agathe Azencott , Samuel Kaski , Makoto Yamada
Bioinformatics, 2019, 35 (14), ⟨10.1093/bioinformatics/btz333⟩
Journal articles hal-02072349v1
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Asymptotic Results on Adaptive False Discovery Rate Controlling Procedures Based on Kernel Estimators

Pierre Neuvial
Journal of Machine Learning Research, 2013, 14, pp.1423-1459
Journal articles hal-00460677v2
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ipcwswitch: An R package for inverse probability of censoring weighting with an application to switches in clinical trials

Nathalie Graffeo , Aurélien Latouche , Christophe Le Tourneau , Sylvie Chevret
Computers in Biology and Medicine, 2019, 111, pp.103339. ⟨10.1016/j.compbiomed.2019.103339⟩
Journal articles hal-02349298v1
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Progress and open challenges in extremely high-dimensional medical outcome prediction

Kevin Bleakley
Journées MAS et Journée en l'honneur de Jacques Neveu, Aug 2010, Talence, France
Documents associated with scientific events inria-00509772v1
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Trajectories, bifurcations and pseudotime in large clinical datasets: applications to myocardial infarction and diabetes data

Sergey E Golovenkin , Jonathan Bac , Alexander Chervov , Evgeny M Mirkes , Yuliya V Orlova , et al.
GigaScience, 2020, 9 (11), pp.giaa128. ⟨10.1093/gigascience/giaa128⟩
Journal articles hal-02972281v1

The Weighted Kendall and High-order Kernels for Permutations

Yunlong Jiao , Jean-Philippe Vert
35th International Conference on Machine Learning, Jul 2018, Stockholm, Sweden. pp.2314--2322
Conference papers hal-01717385v1

A systematic analysis of gene-gene interaction in multiple sclerosis

Lotfi Slim , Clément Chatelain , Hélène de Foucauld , Chloé-Agathe Azencott
BMC Medical Genomics, 2022, 15 (1), pp.100. ⟨10.1186/s12920-022-01247-3⟩
Journal articles hal-03122122v1

Nonlinear post-selection inference for genome-wide association studies

Lotfi Slim , Clément Chatelain , Chloé-Agathe Azencott
Pacific Symposium on Biocomputing, Jan 2022, Kohala Coast, Hawaii, United States. ⟨10.1101/2020.09.30.320515⟩
Conference papers hal-03122125v1
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Model learning to identify systemic regulators of the peripheral circadian clock

Julien Martinelli , Sandrine Dulong , Xiao-Mei Li , Michèle Teboul , Sylvain Soliman , et al.
Bioinformatics, 2021, 37 (Supplement_1), pp.9. ⟨10.1093/bioinformatics/btab297⟩
Journal articles hal-03183579v1
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On learning matrices with orthogonal columns or disjoint supports

Kevin Vervier , Pierre Mahé , Alexandre d'Aspremont , Jean-Baptiste Veyrieras , Jean-Philippe Vert
Preprints, Working Papers, ... hal-00985654v2
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LOTUS: a single-and multi-task machine-learning algorithm for the prediction of cancer driver genes

Olivier Collier , Véronique Stoven , Jean-Philippe Vert
Preprints, Working Papers, ... hal-01857394v2

Where Do We Stand in Regularization for Life Science Studies?

Veronica Tozzo , Chloé-Agathe Azencott , Samuele Fiorini , Emanuele Fava , Andrea Trucco , et al.
Journal of Computational Biology, 2021, ⟨10.1089/cmb.2019.0371⟩
Journal articles hal-03367708v1
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Increasing stability and interpretability of gene expression signatures

Anne-Claire Haury , Laurent Jacob , Jean-Philippe Vert
Preprints, Working Papers, ... hal-00448395v1
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Bioimage Informatics for Phenomics

Thomas Walter
Bioinformatics [q-bio.QM]. Sorbonne Université, 2020
Habilitation à diriger des recherches tel-02981391v1
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ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples

Fantine Mordelet , Jean-Philippe Vert
Preprints, Working Papers, ... hal-00594774v1
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Tight convex relaxations for sparse matrix factorization

Emile Richard , Guillaume Obozinski , Jean-Philippe Vert
Preprints, Working Papers, ... hal-01025959v3
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Scaling ResNets in the Large-depth Regime

Pierre Marion , Adeline Fermanian , Gérard Biau , Jean-Philippe Vert
Preprints, Working Papers, ... hal-03697725v1